Gene detail

Detailed information of OS493_018579-T1 in Lophelia pertusa

Genomic Location: scaffold_61:2166719...2174066
NR annotation: KAJ7391528.1, mitochondrial electron transport, NADH to ubiquinone [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54UT2	Deoxyguanosine kinase OS=Dictyostelium discoideum OX=44689 GN=dgk PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01712 all species →	dNK	Deoxynucleoside kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050566 all species →	Family	Deoxyribonucleoside Kinase	Interproscan
IPR031314 all species →	Domain	Deoxynucleoside kinase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10513 all species →	DEOXYNUCLEOSIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018579-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018579-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

29.2Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.37	7.17
polyp at pH7 6	18	15	5.15	9.21
coral polyp · control treatment	16	16	5.11	27.94
coral polyp · oil and dispersant treatment	16	16	3.93	29.20
coral polyp · oil treatment	16	15	4.05	8.10
coral polyp · dispersant treatment	16	15	3.09	6.41
Polyp	10	8	3.72	10.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.