Gene detail

Detailed information of OS493_018590-T1 in Lophelia pertusa

Genomic Location: scaffold_62:110234...117381
NR annotation: KAJ7384903.1, Dysbindin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZWE6	Dysbindin-A OS=Danio rerio OX=7955 GN=dtnbp1a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007694 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_018590-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR007531 all species →	Family	Dysbindin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16294 all species →	DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20189	DTNBP1, BLOC1S8; dysbindin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018590-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

72.1Max TPM

25.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	33.02	45.54
polyp at pH7 6	18	18	40.39	72.07
coral polyp · control treatment	16	16	22.19	32.96
coral polyp · oil and dispersant treatment	16	16	16.98	37.62
coral polyp · oil treatment	16	16	21.90	36.51
coral polyp · dispersant treatment	16	16	16.02	25.66
Polyp	10	10	21.57	33.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.44
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.17
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.82
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.98
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	33.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	28.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.