Gene detail

Detailed information of OS493_018607-T1 in Lophelia pertusa

Genomic Location: scaffold_62:288874...291879
NR annotation: KAJ7384920.1, Cytochrome b-c1 complex subunit Rieske, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VQ29	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Drosophila melanogaster OX=7227 GN=RFeSP PE=1 SV=3
Q9CR68	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus OX=10090 GN=Uqcrfs1 PE=1 SV=1
Q69BJ7	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus OX=9521 GN=UQCRFS1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00355 all species →	Rieske	Rieske [2Fe-2S] domain	Domain	Interproscan
PF09165 all species →	Ubiq-Cytc-red_N	Ubiquinol-cytochrome c reductase 8 kDa, N-terminal	Domain	Interproscan
PF02921 all species →	UCR_TM	Ubiquinol cytochrome reductase transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017941 all species →	Domain	Rieske [2Fe-2S] iron-sulphur domain	Interproscan
IPR037008 all species →	Homologous_superfamily	Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamily	Interproscan
IPR015248 all species →	Domain	Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminal	Interproscan
IPR014349 all species →	Family	Rieske iron-sulphur protein	Interproscan
IPR006317 all species →	Domain	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	Interproscan
IPR005805 all species →	Domain	Rieske iron-sulphur protein, C-terminal	Interproscan
IPR004192 all species →	Domain	Cytochrome b-c1 complex subunit Rieske, transmembrane domain	Interproscan
IPR036922 all species →	Homologous_superfamily	Rieske [2Fe-2S] iron-sulphur domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10134 all species →	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0008121 all species →	Molecular Function	ubiquinol-cytochrome-c reductase activity	Interproscan
GO:0005750 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex III	Interproscan
GO:0006122 all species →	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00411	UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit	EC:7.1.1.8	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018607-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

469.9Max TPM

48.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.46	39.05
polyp at pH7 6	18	18	35.21	45.59
coral polyp · control treatment	16	16	75.67	469.94
coral polyp · oil and dispersant treatment	16	16	74.95	404.74
coral polyp · oil treatment	16	16	46.51	62.02
coral polyp · dispersant treatment	16	16	41.02	66.67
Polyp	10	10	33.89	60.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.41
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	469.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	404.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.34
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	60.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	59.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	42.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	33.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.