Detailed information of OS493_018618-T1 in Lophelia pertusa

Genomic Location: scaffold_62:344907...348009
NR annotation: KAJ7384930.1, Ribosome biogenesis protein 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q562C2Ribosome biogenesis protein BOP1 OS=Rattus norvegicus OX=10116 GN=Bop1 PE=1 SV=1
P97452Ribosome biogenesis protein BOP1 OS=Mus musculus OX=10090 GN=Bop1 PE=1 SV=1
Q14137Ribosome biogenesis protein BOP1 OS=Homo sapiens OX=9606 GN=BOP1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005052 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08145
all species →		BOP1NTBOP1NT (NUC169) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028598
all species →		FamilyWD repeat BOP1/Erb1Interproscan
IPR012953
all species →		DomainBOP1, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17605
all species →		RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000463
all species →		Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042254
all species →		Biological Processribosome biogenesisInterproscan
GO:0043021
all species →		Molecular Functionribonucleoprotein complex bindingInterproscan
GO:0070545
all species →		Cellular ComponentPeBoW complexInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_018618-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018618-T1 global co-expression network
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