Gene detail

Detailed information of OS493_018621-T1 in Lophelia pertusa

Genomic Location: scaffold_62:386882...397428
NR annotation: KAJ7384933.1, stress-responsive transcription factor hsf1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DJ8	Heat shock factor protein 1 OS=Bos taurus OX=9913 GN=HSF1 PE=2 SV=1
P38529	Heat shock factor protein 1 OS=Gallus gallus OX=9031 GN=HSF1 PE=1 SV=1
Q00613	Heat shock factor protein 1 OS=Homo sapiens OX=9606 GN=HSF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003444 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00447 all species →	HSF_DNA-bind	HSF-type DNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000232 all species →	Domain	Heat shock factor (HSF)-type, DNA-binding	Interproscan
IPR027725 all species →	Family	Heat shock transcription factor family	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10015 all species →	HEAT SHOCK TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09414	HSF1; heat shock transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018621-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,295.9Max TPM

161.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	81.23	119.32
polyp at pH7 6	18	18	98.49	139.77
coral polyp · control treatment	16	16	115.45	209.20
coral polyp · oil and dispersant treatment	16	16	140.85	345.53
coral polyp · oil treatment	16	16	99.13	172.80
coral polyp · dispersant treatment	16	16	435.78	1,295.93
Polyp	10	10	186.75	670.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	114.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	139.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	209.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	169.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	123.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	345.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	326.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	258.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	255.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	197.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	172.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	171.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	131.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,295.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	594.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	546.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	524.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	520.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	442.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	439.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	411.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	401.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	364.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	348.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	293.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	282.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	238.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	670.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	356.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	286.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	114.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	92.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	83.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	69.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	66.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	65.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	61.82

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.