Gene detail

Detailed information of OS493_018631-T1 in Lophelia pertusa

Genomic Location: scaffold_62:507924...519796
NR annotation: KAJ7384943.1, hypothetical protein OS493_018631 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O74212	Acyl-lipid (8-3)-desaturase OS=Mortierella alpina OX=64518 GN=DES1 PE=1 SV=1
O96099	Acyl-lipid (8-3)-desaturase B OS=Dictyostelium discoideum OX=44689 GN=fadB PE=1 SV=1
Q9Y1W0	Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum OX=44689 GN=fadA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR012171 all species →	Family	Fatty acid desaturase	Interproscan
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19353 all species →	FATTY ACID DESATURASE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016717 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018631-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018631-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

35.7Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.66	8.79
polyp at pH7 6	18	16	6.66	16.95
coral polyp · control treatment	16	16	7.47	16.39
coral polyp · oil and dispersant treatment	16	16	6.22	14.68
coral polyp · oil treatment	16	16	6.34	11.67
coral polyp · dispersant treatment	16	16	12.94	35.69
Polyp	10	9	2.67	5.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.