Gene detail

Detailed information of OS493_018636-T1 in Lophelia pertusa

Genomic Location: scaffold_62:566520...572213
NR annotation: KAJ7384948.1, hypothetical protein OS493_018636 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20918	Plasminogen OS=Mus musculus OX=10090 GN=Plg PE=1 SV=3
Q01177	Plasminogen OS=Rattus norvegicus OX=10116 GN=Plg PE=2 SV=2
P06867	Plasminogen OS=Sus scrofa OX=9823 GN=PLG PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000411 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018636-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018636-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

22.3Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.31	21.94
polyp at pH7 6	18	13	5.30	15.67
coral polyp · control treatment	16	15	4.63	17.10
coral polyp · oil and dispersant treatment	16	11	1.55	5.41
coral polyp · oil treatment	16	14	2.84	11.05
coral polyp · dispersant treatment	16	15	3.25	8.82
Polyp	10	7	4.63	22.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.