Gene detail

Detailed information of OS493_018637-T1 in Lophelia pertusa

Genomic Location: scaffold_62:574198...577565
NR annotation: KAJ7384949.1, hypothetical protein OS493_018637 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7M323	Plasminogen (Fragment) OS=Capra hircus OX=9925 GN=PLG PE=1 SV=1
Q5R8X6	Plasminogen OS=Pongo abelii OX=9601 GN=PLG PE=2 SV=1
P26928	Hepatocyte growth factor-like protein OS=Mus musculus OX=10090 GN=Mst1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000396 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018637-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018637-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

67.5Max TPM

14.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.76	31.37
polyp at pH7 6	18	18	9.67	17.66
coral polyp · control treatment	16	16	21.99	67.45
coral polyp · oil and dispersant treatment	16	16	7.69	18.57
coral polyp · oil treatment	16	16	16.68	64.39
coral polyp · dispersant treatment	16	16	10.74	29.72
Polyp	10	10	16.29	31.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	27.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.