Gene detail

Detailed information of OS493_018638-T1 in Lophelia pertusa

Genomic Location: scaffold_62:581698...599494
NR annotation: KAJ7384950.1, hypothetical protein OS493_018638 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01177	Plasminogen OS=Rattus norvegicus OX=10116 GN=Plg PE=2 SV=2
Q16609	Putative apolipoprotein(a)-like protein 2 OS=Homo sapiens OX=9606 GN=LPAL2 PE=5 SV=1
O18783	Plasminogen OS=Notamacropus eugenii OX=9315 GN=PLG PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011611 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018638-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018638-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

13.6Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.85	2.49
polyp at pH7 6	18	18	3.78	13.25
coral polyp · control treatment	16	16	4.18	10.12
coral polyp · oil and dispersant treatment	16	16	4.65	8.75
coral polyp · oil treatment	16	16	3.74	7.43
coral polyp · dispersant treatment	16	16	4.65	13.64
Polyp	10	9	0.96	2.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.