Detailed information of OS493_018645-T1 in Lophelia pertusa

Genomic Location: scaffold_62:650380...652252
NR annotation: KAJ7384957.1, Nucleolar protein 9 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006296 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00806
all species →		PUFPumilio-family RNA binding repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040000
all species →		FamilyNucleolar protein 9Interproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR001313
all species →		RepeatPumilio RNA-binding repeatInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13102
all species →		NUCLEOLAR PROTEIN 9Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000056
all species →		Biological Processribosomal small subunit export from nucleusInterproscan
GO:0000447
all species →		Biological Processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000472
all species →		Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480
all species →		Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030686
all species →		Cellular Component90S preribosomeInterproscan
GO:0030688
all species →		Cellular Componentpreribosome, small subunit precursorInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_018645-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018645-T1 global co-expression network
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