Gene detail

Detailed information of OS493_018663-T1 in Lophelia pertusa

Genomic Location: scaffold_62:849846...856989
NR annotation: KAJ7384974.1, hypothetical protein OS493_018663 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8DZE6	Wilms tumor protein 1-interacting protein homolog OS=Danio rerio OX=7955 GN=wtip PE=3 SV=1
Q9VY77	LIM domain-containing protein jub OS=Drosophila melanogaster OX=7227 GN=jub PE=1 SV=3
A9LS46	Wilms tumor protein 1-interacting protein homolog OS=Xenopus laevis OX=8355 GN=wtip PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002717 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR047172 all species →	Family	Ajuba-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24219 all species →	LIM DOMAIN-CONTAINING PROTEIN JUB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0001666 all species →	Biological Process	response to hypoxia	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0035331 all species →	Biological Process	negative regulation of hippo signaling	Interproscan
GO:2000637 all species →	Biological Process	positive regulation of miRNA-mediated gene silencing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018663-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018663-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

34.9Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.98	24.98
polyp at pH7 6	18	18	13.38	26.77
coral polyp · control treatment	16	16	9.94	25.75
coral polyp · oil and dispersant treatment	16	16	6.20	34.93
coral polyp · oil treatment	16	16	9.42	26.55
coral polyp · dispersant treatment	16	16	7.46	17.96
Polyp	10	10	14.58	23.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.