Gene detail

Detailed information of OS493_018664-T1 in Lophelia pertusa

Genomic Location: scaffold_62:858782...862415
NR annotation: KAJ7384975.1, hypothetical protein OS493_018664 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CG13	Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens OX=9606 GN=CHTF8 PE=1 SV=1
P0CG11	Chromosome transmission fidelity protein 8 homolog OS=Bos taurus OX=9913 GN=CHTF8 PE=3 SV=1
P0C6T1	Chromosome transmission fidelity protein 8 homolog OS=Rattus norvegicus OX=10116 GN=Chtf8 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09696 all species →	Ctf8	Ctf8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018607 all species →	Family	Chromosome transmission fidelity protein 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28605 all species →	CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0031390 all species →	Cellular Component	Ctf18 RFC-like complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11270	CTF8; chromosome transmission fidelity protein 8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018664-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

83TPM > 0

7Conditions

23.4Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	1.95	5.60
polyp at pH7 6	18	8	1.12	5.17
coral polyp · control treatment	16	14	2.75	23.37
coral polyp · oil and dispersant treatment	16	12	1.85	12.54
coral polyp · oil treatment	16	14	1.44	4.18
coral polyp · dispersant treatment	16	14	1.36	3.59
Polyp	10	9	1.94	5.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.