Gene detail

Detailed information of OS493_018670-T1 in Lophelia pertusa

Genomic Location: scaffold_62:910576...919077
NR annotation: KAJ7384981.1, hypothetical protein OS493_018670 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BXQ2	GPI-anchor transamidase component PIGT OS=Mus musculus OX=10090 GN=Pigt PE=1 SV=2
Q969N2	GPI-anchor transamidase component PIGT OS=Homo sapiens OX=9606 GN=PIGT PE=1 SV=1
P38875	GPI transamidase component GPI16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GPI16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04113 all species →	Gpi16	Gpi16 subunit, GPI transamidase component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007245 all species →	Family	GPI transamidase component PIG-T	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12959 all species →	GPI TRANSAMIDASE COMPONENT PIG-T-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05292	PIGT; GPI-anchor transamidase subunit T	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018670-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

19.1Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.38	12.09
polyp at pH7 6	18	18	9.23	12.76
coral polyp · control treatment	16	16	10.87	17.12
coral polyp · oil and dispersant treatment	16	16	8.35	12.44
coral polyp · oil treatment	16	16	11.88	16.12
coral polyp · dispersant treatment	16	16	7.68	19.12
Polyp	10	10	8.04	12.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.47
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.