Gene detail

Detailed information of OS493_018682-T1 in Lophelia pertusa

Genomic Location: scaffold_62:1016085...1023821
NR annotation: KAJ7384993.1, hypothetical protein OS493_018682 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5FMF6	Ribosome-recycling factor OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=frr PE=3 SV=1
A8F0R2	Ribosome-recycling factor OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=frr PE=3 SV=2
Q9X5F0	Ribosome-recycling factor OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=frr PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006473 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01765 all species →	RRF	Ribosome recycling factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036191 all species →	Homologous_superfamily	RRF superfamily	Interproscan
IPR023584 all species →	Domain	Ribosome recycling factor domain	Interproscan
IPR002661 all species →	Family	Ribosome recycling factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20982 all species →	RIBOSOME RECYCLING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0043023 all species →	Molecular Function	ribosomal large subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02838	frr, MRRF, RRF; ribosome recycling factor	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_018682-T1 global co-expression network