Gene detail

Detailed information of OS493_018704-T1 in Lophelia pertusa

Genomic Location: scaffold_62:1324932...1335420
NR annotation: KAJ7385015.1, Beta-catenin-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CWL8	Beta-catenin-like protein 1 OS=Mus musculus OX=10090 GN=Ctnnbl1 PE=1 SV=1
O62703	Beta-catenin-like protein 1 OS=Bos taurus OX=9913 GN=CTNNBL1 PE=2 SV=3
Q4V8K2	Beta-catenin-like protein 1 OS=Rattus norvegicus OX=10116 GN=Ctnnbl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006474 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08216 all species →	CTNNBL	Catenin-beta-like, Arm-motif containing nuclear	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039678 all species →	Family	Beta-catenin-like protein 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013180 all species →	Domain	Beta-catenin-like protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14978 all species →	BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12864	CTNNBL1; beta-catenin-like protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018704-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

44.7Max TPM

15.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.14	21.08
polyp at pH7 6	18	18	17.68	24.90
coral polyp · control treatment	16	16	17.17	44.66
coral polyp · oil and dispersant treatment	16	16	11.07	33.69
coral polyp · oil treatment	16	16	14.44	23.12
coral polyp · dispersant treatment	16	16	9.91	22.38
Polyp	10	10	19.97	39.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.73

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.