Gene detail

Detailed information of OS493_018813-T1 in Lophelia pertusa

Genomic Location: scaffold_63:943513...948400
NR annotation: KAJ7379019.1, Eukaryotic translation initiation factor 4E-binding protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70445	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Mus musculus OX=10090 GN=Eif4ebp2 PE=1 SV=1
Q13542	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens OX=9606 GN=EIF4EBP2 PE=1 SV=1
Q98TT6	Eukaryotic translation initiation factor 4E-binding protein 3-like OS=Danio rerio OX=7955 GN=eif4ebp3l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008284 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05456 all species →	eIF_4EBP	Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008606 all species →	Family	Eukaryotic translation initiation factor 4E binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12669 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008190 all species →	Molecular Function	eukaryotic initiation factor 4E binding	Interproscan
GO:0045947 all species →	Biological Process	negative regulation of translational initiation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018813-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018813-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,088.8Max TPM

488.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	625.33	881.28
polyp at pH7 6	18	18	580.51	730.73
coral polyp · control treatment	16	16	407.99	582.98
coral polyp · oil and dispersant treatment	16	16	461.82	741.27
coral polyp · oil treatment	16	16	499.72	693.98
coral polyp · dispersant treatment	16	16	271.04	549.68
Polyp	10	10	575.09	1,088.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	881.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	872.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	712.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	707.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	633.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	623.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	618.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	617.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	617.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	609.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	602.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	596.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	569.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	563.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	557.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	547.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	483.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	440.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	730.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	713.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	640.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	639.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	636.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	629.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	599.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	588.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	572.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	572.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	570.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	565.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	541.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	529.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	492.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	492.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	490.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	443.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	582.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	502.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	484.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	479.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	453.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	442.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	436.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	436.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	396.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	380.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	373.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	366.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	339.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	319.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	301.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	231.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	741.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	705.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	698.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	599.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	567.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	514.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	425.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	420.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	417.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	384.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	382.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	350.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	339.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	338.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	271.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	231.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	693.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	678.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	642.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	599.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	583.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	536.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	495.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	478.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	477.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	471.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	443.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	441.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	435.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	374.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	365.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	277.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	549.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	485.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	338.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	319.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	273.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	271.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	247.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	247.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	246.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	234.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	232.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	226.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	208.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	190.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,088.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	798.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	636.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	629.44
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	607.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	503.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	460.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	414.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	367.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	244.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.