Gene detail

Detailed information of OS493_018828-T1 in Lophelia pertusa

Genomic Location: scaffold_63:1092129...1100353
NR annotation: KAJ7379034.1, Zinc finger MIZ domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NF64	Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZMIZ2 PE=1 SV=2
Q6P1E1	Zinc finger MIZ domain-containing protein 1 OS=Mus musculus OX=10090 GN=Zmiz1 PE=1 SV=1
Q9ULJ6	Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZMIZ1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001604 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02891 all species →	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0030374 all species →	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22403	ZMIZ; zinc finger MIZ domain-containing protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018828-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

259.1Max TPM

54.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.89	72.39
polyp at pH7 6	18	18	37.03	50.68
coral polyp · control treatment	16	16	50.98	113.05
coral polyp · oil and dispersant treatment	16	16	84.72	140.82
coral polyp · oil treatment	16	16	50.56	81.56
coral polyp · dispersant treatment	16	16	88.38	259.07
Polyp	10	10	17.68	29.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.26
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	259.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.88
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.