Gene detail

Detailed information of OS493_018864-T1 in Lophelia pertusa

Genomic Location: scaffold_63:1619989...1620636
NR annotation: KAJ7379068.1, DnaJ sub B member 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QYI5	DnaJ homolog subfamily B member 2 OS=Mus musculus OX=10090 GN=Dnajb2 PE=1 SV=3
P25686	DnaJ homolog subfamily B member 2 OS=Homo sapiens OX=9606 GN=DNAJB2 PE=1 SV=3
Q5XGU5	DnaJ homolog subfamily B member 6-B OS=Xenopus laevis OX=8355 GN=dnajb6-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002793 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043183 all species →	Family	DnaJ homolog subfamily B member 2/6-like	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45168 all species →	DNAJ HOMOLOG SUBFAMILY B MEMBER 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0061077 all species →	Biological Process	chaperone-mediated protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018864-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018864-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.8Max TPM

32.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.47	29.64
polyp at pH7 6	18	18	22.90	33.44
coral polyp · control treatment	16	16	37.59	59.11
coral polyp · oil and dispersant treatment	16	16	48.24	75.83
coral polyp · oil treatment	16	16	33.49	55.17
coral polyp · dispersant treatment	16	16	38.19	67.42
Polyp	10	10	19.18	29.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.64
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.98
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	29.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.