Gene detail

Detailed information of OS493_018866-T1 in Lophelia pertusa

Genomic Location: scaffold_63:1623252...1625287
NR annotation: KAJ7379070.1, hypothetical protein OS493_018866 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0S6XAW4	2-oxoglutarate-dependent dioxygenase frbA OS=Dothideomycetidae sp. (strain 11243) OX=1603295 GN=frbA PE=1 SV=1
A0A455ZMR3	2-oxoglutarate-Fe(II) type oxidoreductase ppzD OS=Metarhizium majus (strain ARSEF 297) OX=1276143 GN=ppzD PE=1 SV=1
A0A166YZY4	2-oxoglutarate-Fe(II) type oxidoreductase ppzD OS=Metarhizium rileyi (strain RCEF 4871) OX=1649241 GN=ppzD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000370 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14226 all species →	DIOX_N	non-haem dioxygenase in morphine synthesis N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027443 all species →	Homologous_superfamily	Isopenicillin N synthase-like superfamily	Interproscan
IPR026992 all species →	Domain	Non-haem dioxygenase N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10209 all species →	OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_018866-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018866-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018866-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

38.8Max TPM

6.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.14	17.33
polyp at pH7 6	18	16	16.57	38.84
coral polyp · control treatment	16	16	6.10	13.70
coral polyp · oil and dispersant treatment	16	15	4.61	22.75
coral polyp · oil treatment	16	16	3.52	6.69
coral polyp · dispersant treatment	16	16	6.13	15.21
Polyp	10	10	3.41	6.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.