Gene detail

Detailed information of OS493_018877-T1 in Lophelia pertusa

Genomic Location: scaffold_63:1755032...1758639
NR annotation: KAJ7379080.1, DOMON domain-containing protein frrs1L [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VE04	Ferric-chelate reductase 1 OS=Bos taurus OX=9913 GN=FRRS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR051237 all species →	Family	Ferric-chelate Reductase and Defense	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45828 all species →	CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018877-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018877-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

359.9Max TPM

58.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.92	53.84
polyp at pH7 6	18	18	31.10	66.91
coral polyp · control treatment	16	16	69.61	194.01
coral polyp · oil and dispersant treatment	16	16	126.65	359.92
coral polyp · oil treatment	16	16	68.87	241.11
coral polyp · dispersant treatment	16	16	51.98	132.70
Polyp	10	10	30.38	94.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.28
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	194.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	359.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	183.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	150.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	132.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	94.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	66.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	41.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	36.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.