Gene detail

Detailed information of OS493_018878-T1 in Lophelia pertusa

Genomic Location: scaffold_63:1769387...1782079
NR annotation: KAJ7379081.1, DOMON domain-containing protein frrs1L [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZNA5	Ferric-chelate reductase 1 OS=Homo sapiens OX=9606 GN=FRRS1 PE=1 SV=2
A2VE04	Ferric-chelate reductase 1 OS=Bos taurus OX=9913 GN=FRRS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03351 all species →	DOMON	DOMON domain	Domain	Interproscan
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051237 all species →	Family	Ferric-chelate Reductase and Defense	Interproscan
IPR005018 all species →	Domain	DOMON domain	Interproscan
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45828 all species →	CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018878-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018878-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

993.1Max TPM

125.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.50	29.73
polyp at pH7 6	18	18	32.48	74.12
coral polyp · control treatment	16	16	137.55	505.04
coral polyp · oil and dispersant treatment	16	16	300.04	885.25
coral polyp · oil treatment	16	16	105.61	303.93
coral polyp · dispersant treatment	16	16	249.90	993.06
Polyp	10	10	27.02	70.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	505.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	317.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	181.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	885.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	691.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	390.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	376.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	308.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	303.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	300.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	299.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	297.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	237.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	166.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	303.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	126.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	993.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	554.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	501.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	315.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	275.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	230.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	191.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	187.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	126.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	70.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	44.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	30.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.