Detailed information of OS493_018922-T1 in Lophelia pertusa

Genomic Location: scaffold_64:187965...189592
NR annotation: KAJ7372419.1, hypothetical protein OS493_018922 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006172 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01847
all species →		VHLVHL beta domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022772
all species →		Domainvon Hippel-Lindau disease tumour suppressor, beta/alpha domainInterproscan
IPR036208
all species →		Homologous_superfamilyVHL superfamilyInterproscan
IPR037139
all species →		Homologous_superfamilyvon Hippel-Lindau disease tumour suppressor, alpha domain superfamilyInterproscan
IPR024053
all species →		Domainvon Hippel-Lindau disease tumour suppressor, beta domainInterproscan
IPR037140
all species →		Homologous_superfamilyvon Hippel-Lindau disease tumour suppressor, beta domain superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for OS493_018922-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for OS493_018922-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03871VHL; von Hippel-Lindau disease tumor supressor-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018922-T1 global co-expression network
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