Gene detail

Detailed information of OS493_018998-T1 in Lophelia pertusa

Genomic Location: scaffold_64:1135891...1141219
NR annotation: KAJ7372491.1, hypothetical protein OS493_018998 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7LKY2	Adducin-related protein C1289.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC1289.14 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004653 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00596 all species →	Aldolase_II	Class II Aldolase and Adducin N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036409 all species →	Homologous_superfamily	Class II aldolase/adducin N-terminal domain superfamily	Interproscan
IPR001303 all species →	Domain	Class II aldolase/adducin N-terminal	Interproscan
IPR051017 all species →	Family	Aldolase class II Adducin subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10672 all species →	ADDUCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01628	fucA; L-fuculose-phosphate aldolase	EC:4.1.2.17	Fructose and mannose metabolism	ko00051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018998-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.9Max TPM

12.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.70	26.59
polyp at pH7 6	18	18	15.74	22.92
coral polyp · control treatment	16	16	13.59	21.83
coral polyp · oil and dispersant treatment	16	16	10.71	20.73
coral polyp · oil treatment	16	16	14.36	26.92
coral polyp · dispersant treatment	16	16	10.44	24.86
Polyp	10	9	5.71	11.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.