Gene detail

Detailed information of OS493_019038-T1 in Lophelia pertusa

Genomic Location: scaffold_64:1611235...1616366
NR annotation: KAJ7372529.1, hypothetical protein OS493_019038 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18014 all species →	Acetyltransf_18	Acetyltransferase (GNAT) domain	Domain	Interproscan
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041496 all species →	Domain	YitH/HolE, acetyltransferase (GNAT) domain	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR052729 all species →	Family	Acyl/Acetyltransferase Enzymes	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47237 all species →	SLL0310 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019038-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019038-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

7.5Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.56	4.73
polyp at pH7 6	18	13	1.80	4.73
coral polyp · control treatment	16	16	2.88	5.37
coral polyp · oil and dispersant treatment	16	16	2.40	3.21
coral polyp · oil treatment	16	16	2.92	7.51
coral polyp · dispersant treatment	16	16	2.22	4.26
Polyp	10	7	1.05	1.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.