Gene detail

Detailed information of OS493_019053-T1 in Lophelia pertusa

Genomic Location: scaffold_64:1757194...1758991
NR annotation: KAJ7372544.1, hypothetical protein OS493_019053 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052392 all species →	Family	Kelch repeat and BTB domain-containing protein	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46375 all species →	KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019053-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019053-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

28.3Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.42	16.11
polyp at pH7 6	18	18	7.42	14.12
coral polyp · control treatment	16	16	15.94	23.97
coral polyp · oil and dispersant treatment	16	16	11.58	28.30
coral polyp · oil treatment	16	16	13.98	20.99
coral polyp · dispersant treatment	16	15	6.22	11.16
Polyp	10	8	4.95	8.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.