Detailed information of OS493_019099-T1 in Lophelia pertusa

Genomic Location: scaffold_65:376505...386566
NR annotation: KAJ7360012.1, hypothetical protein OS493_019099, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000918 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02494
all species →		HYRHYR domainDomainInterproscan
PF07699
all species →		Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003410
all species →		DomainHYR domainInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR011641
all species →		DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24273
all species →		FI04643P-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for OS493_019099-T1 in Lophelia pertusa.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019099-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019099-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
104TPM > 0
7Conditions
18.4Max TPM
4.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 17 5.86 9.80
polyp at pH7 6 18 16 5.55 11.95
coral polyp · control treatment 16 16 5.61 18.38
coral polyp · oil and dispersant treatment 16 15 3.30 10.14
coral polyp · oil treatment 16 16 2.82 8.36
coral polyp · dispersant treatment 16 16 5.05 15.95
Polyp 10 8 0.79 1.67

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11359522 polyp at pH7 9 not recorded not recorded not recorded - 9.80
SRR11359523 polyp at pH7 9 not recorded not recorded not recorded - 9.27
SRR11359508 polyp at pH7 9 not recorded not recorded not recorded - 8.29
SRR11359519 polyp at pH7 9 not recorded not recorded not recorded - 7.69
SRR11359510 polyp at pH7 9 not recorded not recorded not recorded - 7.68
SRR11359509 polyp at pH7 9 not recorded not recorded not recorded - 7.53
SRR11359521 polyp at pH7 9 not recorded not recorded not recorded - 7.16
SRR11359518 polyp at pH7 9 not recorded not recorded not recorded - 6.60
SRR11359520 polyp at pH7 9 not recorded not recorded not recorded - 6.52
SRR11359511 polyp at pH7 9 not recorded not recorded not recorded - 6.39
SRR11359497 polyp at pH7 9 not recorded not recorded not recorded - 5.91
SRR11359498 polyp at pH7 9 not recorded not recorded not recorded - 5.03
SRR11359494 polyp at pH7 9 not recorded not recorded not recorded - 4.71
SRR11359495 polyp at pH7 9 not recorded not recorded not recorded - 4.46
SRR11359496 polyp at pH7 9 not recorded not recorded not recorded - 4.05
SRR11359499 polyp at pH7 9 not recorded not recorded not recorded - 3.88
SRR11359507 polyp at pH7 9 not recorded not recorded not recorded - 0.58
SRR11359506 polyp at pH7 9 not recorded not recorded not recorded - 0.00
SRR11359504 polyp at pH7 6 not recorded not recorded not recorded - 11.95
SRR11359505 polyp at pH7 6 not recorded not recorded not recorded - 11.62
SRR11359503 polyp at pH7 6 not recorded not recorded not recorded - 10.14
SRR11359527 polyp at pH7 6 not recorded not recorded not recorded - 9.32
SRR11359502 polyp at pH7 6 not recorded not recorded not recorded - 8.36
SRR11359526 polyp at pH7 6 not recorded not recorded not recorded - 7.30
SRR11359514 polyp at pH7 6 not recorded not recorded not recorded - 6.78
SRR11359515 polyp at pH7 6 not recorded not recorded not recorded - 6.08
SRR11359528 polyp at pH7 6 not recorded not recorded not recorded - 5.88
SRR11359529 polyp at pH7 6 not recorded not recorded not recorded - 5.31
SRR11359500 polyp at pH7 6 not recorded not recorded not recorded - 4.18
SRR11359517 polyp at pH7 6 not recorded not recorded not recorded - 3.63
SRR11359501 polyp at pH7 6 not recorded not recorded not recorded - 2.70
SRR11359516 polyp at pH7 6 not recorded not recorded not recorded - 2.62
SRR11359513 polyp at pH7 6 not recorded not recorded not recorded - 2.05
SRR11359512 polyp at pH7 6 not recorded not recorded not recorded - 1.87
SRR11359524 polyp at pH7 6 not recorded not recorded not recorded - 0.00
SRR11359525 polyp at pH7 6 not recorded not recorded not recorded - 0.00
SRR16705971 coral polyp · control treatment coral polyp polyp control treatment SRP344271 18.38
SRR16705972 coral polyp · control treatment coral polyp polyp control treatment SRP344271 14.41
SRR16705965 coral polyp · control treatment coral polyp polyp control treatment SRP344271 10.56
SRR16705957 coral polyp · control treatment coral polyp polyp control treatment SRP344271 9.04
SRR16705960 coral polyp · control treatment coral polyp polyp control treatment SRP344271 8.40
SRR16705943 coral polyp · control treatment coral polyp polyp control treatment SRP344271 6.29
SRR16705975 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.21
SRR16705990 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.01
SRR16705942 coral polyp · control treatment coral polyp polyp control treatment SRP344271 3.32
SRR16705973 coral polyp · control treatment coral polyp polyp control treatment SRP344271 2.42
SRR16705989 coral polyp · control treatment coral polyp polyp control treatment SRP344271 2.16
SRR16705946 coral polyp · control treatment coral polyp polyp control treatment SRP344271 2.16
SRR16705970 coral polyp · control treatment coral polyp polyp control treatment SRP344271 1.91
SRR16705974 coral polyp · control treatment coral polyp polyp control treatment SRP344271 1.18
SRR16705991 coral polyp · control treatment coral polyp polyp control treatment SRP344271 1.12
SRR16705992 coral polyp · control treatment coral polyp polyp control treatment SRP344271 0.24
SRR16705993 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 10.14
SRR16706005 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 6.73
SRR16705976 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 6.09
SRR16705982 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 5.51
SRR16705948 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 5.14
SRR16705944 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.64
SRR16705997 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.53
SRR16705979 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 2.20
SRR16705995 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.92
SRR16705945 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.59
SRR16705978 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.45
SRR16706004 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.19
SRR16705996 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.01
SRR16705994 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 0.86
SRR16705947 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 0.76
SRR16705977 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 0.00
SRR16705999 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 8.36
SRR16705998 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 6.64
SRR16706001 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 5.96
SRR16705950 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.16
SRR16705949 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.06
SRR16706000 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.01
SRR16705952 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.57
SRR16705961 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.57
SRR16705981 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.51
SRR16705980 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.28
SRR16705984 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.35
SRR16705962 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.03
SRR16705964 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 0.91
SRR16705963 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 0.68
SRR16705951 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 0.64
SRR16705983 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 0.42
SRR16705954 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 15.95
SRR16705986 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 14.56
SRR16705959 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 7.55
SRR16705988 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 7.40
SRR16705967 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 7.16
SRR16705956 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 6.65
SRR16706002 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 5.72
SRR16705966 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 4.30
SRR16705969 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.62
SRR16705955 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.41
SRR16705987 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.33
SRR16705958 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.19
SRR16706003 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.72
SRR16705968 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.54
SRR16705985 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.49
SRR16705953 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.17
SRR23025711 Polyp not recorded not recorded not recorded - 1.67
SRR23025710 Polyp not recorded not recorded not recorded - 1.49
SRR23025713 Polyp not recorded not recorded not recorded - 1.35
SRR7746666 Polyp not recorded not recorded not recorded - 1.16
SRR23025712 Polyp not recorded not recorded not recorded - 0.72
SRR7746668 Polyp not recorded not recorded not recorded - 0.63
SRR23025709 Polyp not recorded not recorded not recorded - 0.54
SRR23025708 Polyp not recorded not recorded not recorded - 0.33
SRR7746667 Polyp not recorded not recorded not recorded - 0.00
SRR7746669 Polyp not recorded not recorded not recorded - 0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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