Gene detail

Detailed information of OS493_019122-T1 in Lophelia pertusa

Genomic Location: scaffold_65:840076...867412
NR annotation: KAJ7360032.1, hypothetical protein OS493_019122 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18373	Inactive selenide, water dikinase-like protein OS=Drosophila melanogaster OX=7227 GN=Sps1 PE=2 SV=1
Q0VC82	Selenide, water dikinase 1 OS=Bos taurus OX=9913 GN=SEPHS1 PE=2 SV=1
P49903	Selenide, water dikinase 1 OS=Homo sapiens OX=9606 GN=SEPHS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007768 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00586 all species →	AIRS	AIR synthase related protein, N-terminal domain	Domain	Interproscan
PF02769 all species →	AIRS_C	AIR synthase related protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036921 all species →	Homologous_superfamily	PurM-like, N-terminal domain superfamily	Interproscan
IPR004536 all species →	Family	Selenophosphate synthetase	Interproscan
IPR036676 all species →	Homologous_superfamily	PurM-like, C-terminal domain superfamily	Interproscan
IPR016188 all species →	Domain	PurM-like, N-terminal domain	Interproscan
IPR010918 all species →	Domain	PurM-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10256 all species →	SELENIDE, WATER DIKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004756 all species →	Molecular Function	selenide, water dikinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016260 all species →	Biological Process	selenocysteine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01008	selD, SEPHS; selenide, water dikinase	EC:2.7.9.3	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019122-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

98.2Max TPM

58.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	63.53	81.97
polyp at pH7 6	18	18	71.68	98.17
coral polyp · control treatment	16	16	64.37	86.56
coral polyp · oil and dispersant treatment	16	16	54.69	84.27
coral polyp · oil treatment	16	16	64.02	94.32
coral polyp · dispersant treatment	16	16	45.02	73.35
Polyp	10	10	30.38	50.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	50.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	49.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	37.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	31.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.