Gene detail

Detailed information of OS493_019124-T1 in Lophelia pertusa

Genomic Location: scaffold_65:884979...1030548
NR annotation: KAJ7360034.1, hypothetical protein OS493_019124 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_019124-T1

ATGGATGCCCTTTTGGACTGTATTGATGAAATAGCCTTAGATGGCCTAGACGGTTGTCCTGTACAGGAGTTGTGGACACATCTGGAAGAAAGAAGGCCACCATTCCCTCTGAAGTTGGATGATACAGCAAAGCAGTTTCTATGGAACGCCATTGTCAGGACACCAGATATTGAGTTTTTTGCTCTTACAGAGCCCTTTTCTCATATATTTGGTACAAAACACAAAGAAGAAACTAAACAAGAGAGTGCAAACTGTGAACCAAAGAACCCTCTTGATCAGTTTCCAGGTCCACTCAGATACAATAATGAGTTTAAGCTGATATCTGACCAAGATACTGGAGTACGAGGTTCCTGTCCCAGCTATCATGTGCGAAAAAACATATCGGAGGATGTGCGAGGCCATTCAAGTGGAGATTGTTTAAACTTAGACACTGCCTATGGAAGGTGGGGAGACTCTCTGGTAATGGTTGCTTCTCAGGAGTTAAGAGAAAAAGCTCTTCTTGGCTTAGAGTGTGATCCTAACATTTTAATCACTGATATACAGTATTGTTTGTTGGAACATGTTGGACAAGCAAGGTACAATGGACGCATGCAAAAAACAATTGGCTCCCGTTTCTTCAAGATTGAATCAAGGACAACCTTTCATCATCTTAAAAAATTGAGAAAAGCATGTCTGGTAACCATGCAGCATATTGTGGTAAGTACTACTGATCCAGTGAACTTCTTGAGAAATGTTATTACAAACGTGGTGAGGTTAAAACGGTTCCATGTACAAGAACACCACAAGTACGATGTTCTGGCTTCTAGACTCTGCAGGCTGTTGTTAGATTCACCAAATCAGGAAATGCCATTGATCGACATACAGAGACATTTTATTGAATTAAAGAAAAAGAGTTTGAGAAAGGTAAGACAATTTCTGCAACAGGCAGGATATGTAGTGGAAGAGAAAATTGCAGTGTCGAGTGATGCAACAGACAGCAAAGATTGCAGCCCTCCAAAGAAGAAGTTGAAAAGGGAGGTATTGTCAGTAGGAACAGCTGTTAACCCTGTTAAAATACGACTGCTCAAACCATTTGTTCTGAAAACTGACATCATTCAGCTGCCAGACGATGAGGATGAAGAGGATAATGATGTTGGCAACAATGATGATGATGATTATAATGATGACGTTGATGATGATGAAGAGAATGCTGTGTGGAATGATGATTACGATTCAAATGTTATAGCTGAGAGGCCATTGATAATGCAGGTGTATGACATAATTCAACAGGCAGGATCATGTGGATATACTTTAACACAATGTAAGAAGGCTTGCAAGCTCCCTTTTGCAGATGTAAGAGCTCTTGTCAAAAACTTGAAGAAGAAGAATTTAATTCAGGAGGTTCATCAAGATGTAGCAAAACAAAGAGTTGCATGGTTTGTAGCTACTCCCTTTGTAAAAAACAACATACAAGCAATAAAAGTGAAACAAGTGCAGGATGAACTCAAACAAATGGAGTCCAAAGCTGCAGGTTTAAACATCTCAAAAGGTATGGATTTAAAAGACAAGAAACCAAAGCAAAGAGCTCTAGCTGAGAGAGTTACATATAGAAAACTTAAGAGGAAAGCATTGATACTGGAATATCTGCAGAAGGTGAAAGTTACAGAGGGATGTTATCCAATTCAAAAGTCTGTGATATCTAGTGAAGAAGAAGAAGGTCTAGAGGGACGAATGGATCGAAAGGTGCTGATCAGGATACTTGATGATCTTTGTGCGCAGGGATTAATCAGGCAACTCACGACTGTGATTCACCATGGAACTGTTTCACAAACAGTGGATCTCTTCCTGCATTCATCCATTACTAATGATGATCCTGAAATAGTACTTACTCTGGAACAGTGTCGTGCTCGATTGAGAGATCAATCCTTCAAAGTTGCAGAGAAAGAAGAACGATCAAAGCAATGTACAGAGGAGAAAGAACAAAAGAAACTTGAAAAAGCAGCTGTAGCTGAAGAAAAACAGAGAAAGAAATGTGAAAGGAAGGAAAAGGATGCACAAAAGAAAGCACAACAGGATCAAGAAAAGAAGGAAGCTTTATTAAAAACCAAGGAACAAAGTACACCTGCAAAAGCTCAGTACAAGGTGCAATCTCGAAGGTATGGCTATTTGCCAAGATTCCCCAGGCTACAGTTAATTCATGAACTGTTGTGGCAGCTTGTTTATGGTCAACTTACTCAGAACACATCCGATATAATTGATGTTGATGGACACAAATCCACTGCTGAACAACAAGTTGACTGTGCTAATCAAGTCACCAGAAACATGGATGATGAGTGGATCAATCACTTAAAACCAATGTCAAAACTGTGTGATGAAGCAAGACAGCCACTACCTGGTTGGTTCCGTATGGCTGATGTGTTATTGGTGATGCCTTTGGACATACTTTGCAAGATTATGGACGTACCAGAGGAGATTAAAGGTTTTGATGAATATGCACTTGATCCTGTAAAAAAGTACATGCTTTTCTGTGACCTTCCACAAACTTTGAGGAGCAAGATCAAAGAAAGCGGAGATATAAGCCAGCACCTTTAG

Transcript

OS493_019124-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63505	General transcription factor 3C polypeptide 1 OS=Rattus norvegicus OX=10116 GN=Gtf3c1 PE=1 SV=1
Q12789	General transcription factor 3C polypeptide 1 OS=Homo sapiens OX=9606 GN=GTF3C1 PE=1 SV=4
Q8K284	General transcription factor 3C polypeptide 1 OS=Mus musculus OX=10090 GN=Gtf3c1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001719 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04182 all species →	B-block_TFIIIC	B-block binding subunit of TFIIIC	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR007309 all species →	Domain	B-block binding subunit of TFIIIC	Interproscan
IPR044210 all species →	Family	Transcription facto Tfc3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15180 all species →	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan
GO:0042791 all species →	Biological Process	5S class rRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019124-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_019124-T1 global co-expression network