Gene detail

Detailed information of OS493_019131-T1 in Lophelia pertusa

Genomic Location: scaffold_65:1304659...1314636
NR annotation: KAJ7360040.1, hypothetical protein OS493_019131 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16036	Solute carrier family 25 member 3 OS=Rattus norvegicus OX=10116 GN=Slc25a3 PE=1 SV=1
Q5R7W2	Solute carrier family 25 member 3 OS=Pongo abelii OX=9601 GN=SLC25A3 PE=2 SV=1
Q8VEM8	Solute carrier family 25 member 3 OS=Mus musculus OX=10090 GN=Slc25a3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007586 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR044677 all species →	Family	Mitochondrial phosphate carrier protein SLC25A3/Pic2/Mir1-like	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45671 all species →	SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005315 all species →	Molecular Function	phosphate transmembrane transporter activity	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan
GO:0035435 all species →	Biological Process	phosphate ion transmembrane transport	Interproscan
GO:1990547 all species →	Biological Process	mitochondrial phosphate ion transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15102	SLC25A3, PHC, PIC; solute carrier family 25 (mitochondrial phosphate transporter), member 3	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019131-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

306.7Max TPM

95.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	62.79	98.53
polyp at pH7 6	18	18	85.18	150.26
coral polyp · control treatment	16	16	98.63	213.01
coral polyp · oil and dispersant treatment	16	16	123.10	183.49
coral polyp · oil treatment	16	16	83.38	122.10
coral polyp · dispersant treatment	16	16	123.97	306.66
Polyp	10	10	94.05	171.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	108.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	125.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	183.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	163.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.84
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	306.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	185.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	153.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	171.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	142.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	138.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	117.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	115.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	65.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	65.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	47.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	44.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	30.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.