Detailed information of OS493_019136-T1 in Lophelia pertusa

Genomic Location: scaffold_65:1394640...1405049
NR annotation: KAJ7360045.1, Succinate dehydrogenase assembly factor 2, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B3N8S9Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila erecta OX=7220 GN=GG10665 PE=3 SV=1
B4P2P8Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila yakuba OX=7245 GN=GE23226 PE=3 SV=1
Q4V5I9Succinate dehydrogenase assembly factor 2-A, mitochondrial OS=Drosophila melanogaster OX=7227 GN=CG14757 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008262 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03937
all species →		Sdh5Flavinator of succinate dehydrogenaseDomainInterproscan
PF08005
all species →		PHRPHR domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038648
all species →		Homologous_superfamilyPHR domain superfamilyInterproscan
IPR036714
all species →		Homologous_superfamilyFlavinator of succinate dehydrogenase superfamilyInterproscan
IPR005631
all species →		FamilyFlavinator of succinate dehydrogenaseInterproscan
IPR012983
all species →		DomainPHRInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12469
all species →		PROTEIN EMI5 HOMOLOG, MITOCHONDRIALInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006099
all species →		Biological Processtricarboxylic acid cycleInterproscan
GO:0006121
all species →		Biological Processmitochondrial electron transport, succinate to ubiquinoneInterproscan
GO:0018293
all species →		Biological Processprotein-FAD linkageInterproscan
GO:0034553
all species →		Biological Processmitochondrial respiratory chain complex II assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019136-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019136-T1 global co-expression network
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