Gene detail

Detailed information of OS493_019149-T1 in Lophelia pertusa

Genomic Location: scaffold_65:1819298...1836884
NR annotation: KAJ7360058.1, Glycogen [starch] synthase, liver [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VFC8	Glycogen [starch] synthase OS=Drosophila melanogaster OX=7227 GN=Glys PE=1 SV=2
Q8VCB3	Glycogen [starch] synthase, liver OS=Mus musculus OX=10090 GN=Gys2 PE=1 SV=2
P54840	Glycogen [starch] synthase, liver OS=Homo sapiens OX=9606 GN=GYS2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005905 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05693 all species →	Glycogen_syn	Glycogen synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008631 all species →	Family	Glycogen synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10176 all species →	GLYCOGEN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004373 all species →	Molecular Function	alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00693	GYS; glycogen synthase	EC:2.4.1.11	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019149-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.1Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.00	16.23
polyp at pH7 6	18	18	10.86	13.94
coral polyp · control treatment	16	16	12.10	19.09
coral polyp · oil and dispersant treatment	16	16	10.07	16.74
coral polyp · oil treatment	16	16	11.16	20.12
coral polyp · dispersant treatment	16	16	10.90	18.28
Polyp	10	9	6.07	10.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.