Gene detail

Detailed information of OS493_019424-T1 in Lophelia pertusa

Genomic Location: scaffold_67:1232153...1237242
NR annotation: KAJ7391292.1, hypothetical protein OS493_019424 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009616 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19959 all species →	KINESIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019424-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019424-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

116.2Max TPM

47.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.69	53.15
polyp at pH7 6	18	18	32.67	62.74
coral polyp · control treatment	16	16	59.05	116.21
coral polyp · oil and dispersant treatment	16	16	49.86	110.10
coral polyp · oil treatment	16	16	43.26	63.08
coral polyp · dispersant treatment	16	16	67.92	106.72
Polyp	10	10	47.78	75.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.08
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	75.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	74.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	67.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	56.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	55.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	44.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	44.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.