Gene detail

Detailed information of OS493_019426-T1 in Lophelia pertusa

Genomic Location: scaffold_67:1242446...1266297
NR annotation: KAJ7391294.1, hypothetical protein OS493_019426 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009616 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19959 all species →	KINESIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019426-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

77.3Max TPM

24.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.89	26.08
polyp at pH7 6	18	18	15.54	26.73
coral polyp · control treatment	16	16	30.74	72.95
coral polyp · oil and dispersant treatment	16	16	28.96	77.27
coral polyp · oil treatment	16	16	20.91	43.52
coral polyp · dispersant treatment	16	16	42.40	68.54
Polyp	10	10	15.94	32.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.