Gene detail

Detailed information of OS493_019449-T1 in Lophelia pertusa

Genomic Location: scaffold_67:1671201...1673744
NR annotation: KAJ7391316.1, protein transport [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GR66	Mitochondrial import inner membrane translocase subunit Tim10 B OS=Xenopus laevis OX=8355 GN=timm10b PE=2 SV=1
Q5RDJ0	Mitochondrial import inner membrane translocase subunit Tim10 B OS=Pongo abelii OX=9601 GN=TIMM10B PE=3 SV=1
Q9Y5J6	Mitochondrial import inner membrane translocase subunit Tim10 B OS=Homo sapiens OX=9606 GN=TIMM10B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007352 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02953 all species →	zf-Tim10_DDP	Tim10/DDP family zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035427 all species →	Homologous_superfamily	Tim10-like domain superfamily	Interproscan
IPR050673 all species →	Family	Mitochondrial import inner membrane translocase subunit	Interproscan
IPR004217 all species →	Domain	Tim10-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13172 all species →	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042719 all species →	Cellular Component	mitochondrial intermembrane space protein transporter complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019449-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019449-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

135.0Max TPM

45.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	65.45	116.36
polyp at pH7 6	18	18	76.28	125.59
coral polyp · control treatment	16	16	27.31	91.08
coral polyp · oil and dispersant treatment	16	16	26.09	135.01
coral polyp · oil treatment	16	16	28.18	41.54
coral polyp · dispersant treatment	16	16	17.33	36.76
Polyp	10	10	89.71	134.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	107.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.45
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.49
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.20
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	134.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	114.60
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	111.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	104.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	93.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	86.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	73.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	67.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	62.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.