Detailed information of OS493_019450-T1 in Lophelia pertusa

Genomic Location: scaffold_67:1676444...1679108
NR annotation: KAJ7391317.1, Structural maintenance of chromosomes protein 1B, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O93308Structural maintenance of chromosomes protein 1A OS=Xenopus laevis OX=8355 GN=smc1a PE=1 SV=1
O97593Structural maintenance of chromosomes protein 1A OS=Bos taurus OX=9913 GN=SMC1A PE=1 SV=1
Q14683Structural maintenance of chromosomes protein 1A OS=Homo sapiens OX=9606 GN=SMC1A PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002980 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02463
all species →		SMC_NRecF/RecN/SMC N terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028468
all species →		DomainSmc1, ATP-binding cassette domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003395
all species →		DomainRecF/RecN/SMC, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18937
all species →		STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0007062
all species →		Biological Processsister chromatid cohesionInterproscan
GO:0008278
all species →		Cellular Componentcohesin complexInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019450-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019450-T1 global co-expression network
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