Detailed information of OS493_019451-T1 in Lophelia pertusa

Genomic Location: scaffold_67:1679930...1691034
NR annotation: KAJ7391318.1, Structural maintenance of chromosomes protein 1B, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Z1M9Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus OX=10116 GN=Smc1a PE=1 SV=1
Q920F6Structural maintenance of chromosomes protein 1B OS=Mus musculus OX=10090 GN=Smc1b PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002980 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_019451-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for OS493_019451-T1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR18937
all species →		STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0007062
all species →		Biological Processsister chromatid cohesionInterproscan
GO:0008278
all species →		Cellular Componentcohesin complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019451-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019451-T1 global co-expression network
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