Gene detail

Detailed information of OS493_019456-T1 in Lophelia pertusa

Genomic Location: scaffold_67:1750244...1760918
NR annotation: KAJ7391323.1, Pleiotropic regulator 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KID6	Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1
Q922V4	Pleiotropic regulator 1 OS=Mus musculus OX=10090 GN=Plrg1 PE=1 SV=1
O43660	Pleiotropic regulator 1 OS=Homo sapiens OX=9606 GN=PLRG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005049 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR045241 all species →	Family	WD repeat Prp46/PLRG1-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19923 all species →	WD40 REPEAT PROTEINPRL1/PRL2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12862	PLRG1, PRL1, PRP46; pleiotropic regulator 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019456-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.3Max TPM

31.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.29	43.58
polyp at pH7 6	18	18	38.03	53.29
coral polyp · control treatment	16	16	32.33	59.48
coral polyp · oil and dispersant treatment	16	16	27.89	66.12
coral polyp · oil treatment	16	16	28.17	46.18
coral polyp · dispersant treatment	16	16	20.98	48.13
Polyp	10	10	48.63	89.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	89.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	76.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	72.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	53.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	46.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	46.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	32.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.