Gene detail

Detailed information of OS493_019517-T1 in Lophelia pertusa

Genomic Location: scaffold_68:789448...796873
NR annotation: KAJ7384840.1, HCLS1 binding protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006772 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR039701 all species →	Family	HCLS1-binding protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14431 all species →	HCLS1-BINDING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24094	HS1BP3; HCLS1-binding protein 3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019517-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

20.6Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.62	12.21
polyp at pH7 6	18	17	8.30	13.95
coral polyp · control treatment	16	16	9.90	20.35
coral polyp · oil and dispersant treatment	16	16	6.85	12.59
coral polyp · oil treatment	16	16	8.51	20.58
coral polyp · dispersant treatment	16	16	7.04	14.65
Polyp	10	9	3.28	4.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.