Gene detail

Detailed information of OS493_019522-T1 in Lophelia pertusa

Genomic Location: scaffold_68:870479...875969
NR annotation: KAJ7384845.1, Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94766	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens OX=9606 GN=B3GAT3 PE=1 SV=2
P58158	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus OX=10090 GN=B3gat3 PE=1 SV=1
Q9WU47	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus OX=10029 GN=B3GAT3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03360 all species →	Glyco_transf_43	Glycosyltransferase family 43	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005027 all species →	Family	Glycosyl transferase, family 43	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10896 all species →	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015018 all species →	Molecular Function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0050650 all species →	Biological Process	chondroitin sulfate proteoglycan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10158	B3GAT3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3	EC:2.4.1.135	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019522-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

13.7Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.96	9.42
polyp at pH7 6	18	15	3.52	13.69
coral polyp · control treatment	16	16	2.81	6.54
coral polyp · oil and dispersant treatment	16	16	1.78	6.98
coral polyp · oil treatment	16	16	2.15	5.33
coral polyp · dispersant treatment	16	16	1.33	3.09
Polyp	10	8	1.17	4.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.93
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.