Detailed information of OS493_019575-T1 in Lophelia pertusa

Genomic Location: scaffold_69:247...1222
NR annotation: KAJ7378884.1, hypothetical protein OS493_019575 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010317 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05181
all species →		XPA_CXPA protein C-terminusDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037129
all species →		Homologous_superfamilyXPA domain superfamilyInterproscan
IPR022656
all species →		DomainXPA, C-terminalInterproscan
IPR009061
all species →		Homologous_superfamilyPutative DNA-binding domain superfamilyInterproscan
IPR000465
all species →		FamilyXPA/RAD14Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10142
all species →		DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000110
all species →		Cellular Componentnucleotide-excision repair factor 1 complexInterproscan
GO:0000715
all species →		Biological Processnucleotide-excision repair, DNA damage recognitionInterproscan
GO:0003684
all species →		Molecular Functiondamaged DNA bindingInterproscan
GO:0006284
all species →		Biological Processbase-excision repairInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0033683
all species →		Biological Processobsolete nucleotide-excision repair, DNA incisionInterproscan
GO:0070914
all species →		Biological ProcessUV-damage excision repairInterproscan
GO:1901255
all species →		Biological Processnucleotide-excision repair involved in interstrand cross-link repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019575-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019575-T1 global co-expression network
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