Gene detail

Detailed information of OS493_019577-T1 in Lophelia pertusa

Genomic Location: scaffold_69:11695...26181
NR annotation: KAJ7378886.1, Flotillin-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O61491	Flotillin-1 OS=Drosophila melanogaster OX=7227 GN=Flo1 PE=2 SV=1
O13127	Flotillin-1 OS=Carassius auratus OX=7957 GN=flot1 PE=1 SV=1
Q14254	Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001682 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan
PF15975 all species →	Flot	Flotillin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan
IPR031905 all species →	Domain	Flotillin, C-terminal domain	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002090 all species →	Biological Process	regulation of receptor internalization	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045807 all species →	Biological Process	positive regulation of endocytosis	Interproscan
GO:0070528 all species →	Biological Process	protein kinase C signaling	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan
GO:1901890 all species →	Biological Process	positive regulation of cell junction assembly	Interproscan
GO:2000049 all species →	Biological Process	positive regulation of cell-cell adhesion mediated by cadherin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07192	FLOT; flotillin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019577-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

181.3Max TPM

90.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	65.03	84.96
polyp at pH7 6	18	18	74.45	111.48
coral polyp · control treatment	16	16	125.87	181.25
coral polyp · oil and dispersant treatment	16	16	123.69	171.19
coral polyp · oil treatment	16	16	100.35	151.91
coral polyp · dispersant treatment	16	16	83.09	121.55
Polyp	10	10	55.12	128.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.51
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	105.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	181.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	170.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	161.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	129.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	128.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	71.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	63.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	50.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	49.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	49.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	47.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	45.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.