Gene detail

Detailed information of OS493_019582-T1 in Lophelia pertusa

Genomic Location: scaffold_69:188696...224549
NR annotation: KAJ7378891.1, ATP synthase subunit alpha, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80021	ATP synthase F(1) complex subunit alpha, mitochondrial OS=Sus scrofa OX=9823 GN=ATP5F1A PE=1 SV=2
P19483	ATP synthase F(1) complex subunit alpha, mitochondrial OS=Bos taurus OX=9913 GN=ATP5F1A PE=1 SV=1
Q03265	ATP synthase F(1) complex subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Atp5f1a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003945 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF00306 all species →	ATP-synt_ab_C	ATP synthase alpha/beta chain, C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR005294 all species →	Family	ATP synthase, F1 complex, alpha subunit	Interproscan
IPR023366 all species →	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan
IPR033732 all species →	Domain	ATP synthase, F1 complex, alpha subunit nucleotide-binding domain	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR000793 all species →	Domain	ATP synthase, alpha subunit, C-terminal	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR020003 all species →	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan
IPR038376 all species →	Homologous_superfamily	ATP synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48082 all species →	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005754 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase, catalytic core	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0032559 all species →	Molecular Function	adenyl ribonucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02132	ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019582-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,607.9Max TPM

379.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	414.41	495.78
polyp at pH7 6	18	18	452.74	517.69
coral polyp · control treatment	16	16	405.37	1,607.87
coral polyp · oil and dispersant treatment	16	16	400.10	1,597.91
coral polyp · oil treatment	16	16	337.35	422.36
coral polyp · dispersant treatment	16	16	255.24	381.05
Polyp	10	10	377.41	438.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	495.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	494.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	475.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	474.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	458.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	457.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	445.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	445.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	400.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	389.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	388.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	380.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	378.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	373.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	352.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	352.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	351.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	345.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	517.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	495.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	480.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	480.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	478.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	475.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	470.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	467.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	462.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	461.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	457.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	455.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	453.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	449.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	395.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	395.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	378.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	374.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,607.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	416.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	365.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	363.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	354.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	349.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	335.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	328.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	326.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	325.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	316.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	313.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	304.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	267.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	261.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	249.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,597.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	396.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	362.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	360.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	359.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	341.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	335.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	335.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	334.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	310.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	287.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	286.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	282.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	281.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	264.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	264.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	422.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	416.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	390.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	388.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	357.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	352.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	349.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	345.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	332.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	314.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	312.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	303.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	293.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	282.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	280.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	257.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	381.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	323.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	318.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	297.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	296.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	289.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	287.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	280.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	224.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	218.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	211.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	195.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	194.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	173.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	438.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	432.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	430.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	410.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	386.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	381.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	346.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	319.13
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	314.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	314.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.