Gene detail

Detailed information of OS493_019607-T1 in Lophelia pertusa

Genomic Location: scaffold_69:890721...915749
NR annotation: KAJ7378913.1, hypothetical protein OS493_019607 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O04619	Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana OX=3702 GN=ADNT1 PE=1 SV=1
Q54MZ4	Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum OX=44689 GN=mcfB PE=3 SV=1
Q01888	Solute carrier family 25 member 16 OS=Bos taurus OX=9913 GN=SLC25A16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002170 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002167 all species →	Family	Solute carrier family 25 member 16-like	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24089 all species →	SOLUTE CARRIER FAMILY 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0015215 all species →	Molecular Function	nucleotide transmembrane transporter activity	Interproscan
GO:0051503 all species →	Biological Process	adenine nucleotide transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019607-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019607-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

24.0Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.58	11.16
polyp at pH7 6	18	18	8.62	13.43
coral polyp · control treatment	16	16	12.74	24.04
coral polyp · oil and dispersant treatment	16	16	11.57	18.73
coral polyp · oil treatment	16	16	11.00	18.66
coral polyp · dispersant treatment	16	16	6.51	11.62
Polyp	10	10	8.10	14.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.13

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.