Detailed information of OS493_019609-T1 in Lophelia pertusa

Genomic Location: scaffold_69:923796...938937
NR annotation: KAJ7378915.1, E3 ubiquitin-protein ligase ubr5 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95071E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens OX=9606 GN=UBR5 PE=1 SV=2
Q80TP3E3 ubiquitin-protein ligase UBR5 OS=Mus musculus OX=10090 GN=Ubr5 PE=1 SV=2
Q62671E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus OX=10116 GN=Ubr5 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002381 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11547
all species →		E3_UbLigase_EDDE3 ubiquitin ligase EDDDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024725
all species →		DomainE3 ubiquitin-protein ligase UBR5, ubiquitin-associated domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46276
all species →		E3 UBIQUITIN-PROTEIN LIGASE UBR5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0034450
all species →		Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0090263
all species →		Biological Processpositive regulation of canonical Wnt signaling pathwayInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019609-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019609-T1 global co-expression network
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