Gene detail

Detailed information of OS493_019621-T1 in Lophelia pertusa

Genomic Location: scaffold_69:1153037...1161847
NR annotation: KAJ7378926.1, Transmembrane protein 18 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q641M3	Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1
Q4V7N7	Transmembrane protein 18 OS=Xenopus laevis OX=8355 GN=tmem18 PE=2 SV=1
Q96B42	Transmembrane protein 18 OS=Homo sapiens OX=9606 GN=TMEM18 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14770 all species →	TMEM18	Transmembrane protein 18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026721 all species →	Family	Transmembrane protein 18	Interproscan

PANTHER

No PANTHER signature was detected for OS493_019621-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_019621-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22145	TMEM18; transmembrane protein 18	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019621-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

29.7Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	10.62	23.00
polyp at pH7 6	18	17	12.00	25.30
coral polyp · control treatment	16	16	13.59	20.26
coral polyp · oil and dispersant treatment	16	15	9.32	15.61
coral polyp · oil treatment	16	16	13.95	20.12
coral polyp · dispersant treatment	16	16	11.32	19.50
Polyp	10	10	17.91	29.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.