Gene detail

Detailed information of OS493_019632-T1 in Lophelia pertusa

Genomic Location: scaffold_69:1376790...1383151
NR annotation: KAJ7378936.1, hypothetical protein OS493_019632 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P52649	NADPH oxidase 2 OS=Sus scrofa OX=9823 GN=CYBB PE=2 SV=3
Q95L74	NADPH oxidase 2 OS=Bison bison OX=9901 GN=CYBB PE=2 SV=1
O46522	NADPH oxidase 2 OS=Bos taurus OX=9913 GN=CYBB PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000994 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01794 all species →	Ferric_reduct	Ferric reductase like transmembrane component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050369 all species →	Family	Respiratory burst oxidase/Ferric reductase	Interproscan
IPR000778 all species →	Family	Cytochrome b245, heavy chain	Interproscan
IPR013130 all species →	Domain	Ferric reductase transmembrane component-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11972 all species →	NADPH OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006952 all species →	Biological Process	defense response	Interproscan
GO:0016175 all species →	Molecular Function	superoxide-generating NAD(P)H oxidase activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan
GO:0043020 all species →	Cellular Component	NADPH oxidase complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019632-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019632-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

226.6Max TPM

32.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.65	14.39
polyp at pH7 6	18	15	7.26	15.38
coral polyp · control treatment	16	16	35.86	170.43
coral polyp · oil and dispersant treatment	16	16	74.77	157.29
coral polyp · oil treatment	16	16	23.43	44.62
coral polyp · dispersant treatment	16	16	68.59	226.57
Polyp	10	10	5.68	13.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	170.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	226.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.88

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.