Gene detail

Detailed information of OS493_019697-T1 in Lophelia pertusa

Genomic Location: scaffold_70:281298...288475
NR annotation: KAJ7372253.1, hypothetical protein OS493_019697 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DG85	Uricase OS=Danio rerio OX=7955 GN=uox PE=1 SV=1
P11645	Uricase OS=Oryctolagus cuniculus OX=9986 GN=UOX PE=2 SV=1
Q8MKJ2	Uricase OS=Aotus trivirgatus OX=9505 GN=UOX PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01014 all species →	Uricase	Uricase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002042 all species →	Family	Uricase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42874 all species →	URICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004846 all species →	Molecular Function	urate oxidase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006145 all species →	Biological Process	purine nucleobase catabolic process	Interproscan
GO:0019628 all species →	Biological Process	urate catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019697-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019697-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.7Max TPM

39.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	42.03	69.59
polyp at pH7 6	18	18	48.26	59.78
coral polyp · control treatment	16	16	40.57	75.67
coral polyp · oil and dispersant treatment	16	16	32.37	64.15
coral polyp · oil treatment	16	16	40.97	65.23
coral polyp · dispersant treatment	16	16	31.69	54.13
Polyp	10	10	38.49	57.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.81
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.15
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	57.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	48.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	45.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	39.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	38.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.