Detailed information of OS493_019710-T1 in Lophelia pertusa

Genomic Location: scaffold_70:360981...365608
NR annotation: KAJ7372266.1, Non-structural maintenance of chromosomes element 4 A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NXX6Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens OX=9606 GN=NSMCE4A PE=1 SV=2
Q2TBI1Non-structural maintenance of chromosomes element 4 homolog A OS=Bos taurus OX=9913 GN=NSMCE4A PE=2 SV=1
Q3V124EP300-interacting inhibitor of differentiation 3 OS=Mus musculus OX=10090 GN=Eid3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005991 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15412
all species →		Nse4-Nse3_bdgBinding domain of Nse4/EID3 to Nse3-MAGEDomainInterproscan
PF08743
all species →		Nse4_CNse4 C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027786
all species →		FamilyNse4/EID familyInterproscan
IPR029225
all species →		DomainNse4/EID protein, Nse3/MAGE-binding domainInterproscan
IPR014854
all species →		DomainNon-structural maintenance of chromosome element 4, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16140
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0030915
all species →		Cellular ComponentSmc5-Smc6 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019710-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019710-T1 global co-expression network
TOP