Gene detail

Detailed information of OS493_019719-T1 in Lophelia pertusa

Genomic Location: scaffold_70:438162...439612
NR annotation: KAJ7372275.1, WD repeat-containing protein 47 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CGF6	WD repeat-containing protein 47 OS=Mus musculus OX=10090 GN=Wdr47 PE=1 SV=2
O94967	WD repeat-containing protein 47 OS=Homo sapiens OX=9606 GN=WDR47 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004969 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17814 all species →	LisH_TPL	LisH-like dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040067 all species →	Family	WD repeat-containing protein 47	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19863 all species →	NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019719-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019719-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

31.8Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.45	10.79
polyp at pH7 6	18	17	4.70	7.84
coral polyp · control treatment	16	16	7.69	31.80
coral polyp · oil and dispersant treatment	16	16	5.48	14.60
coral polyp · oil treatment	16	16	6.12	10.30
coral polyp · dispersant treatment	16	15	4.72	10.83
Polyp	10	9	1.91	4.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.