Gene detail

Detailed information of OS493_019737-T1 in Lophelia pertusa

Genomic Location: scaffold_70:609482...618804
NR annotation: KAJ7372293.1, hypothetical protein OS493_019737 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T0U6	Mitochondrial adenyl nucleotide antiporter SLC25A24-B OS=Xenopus laevis OX=8355 GN=slc25a24-b PE=2 SV=1
Q9BV35	Mitochondrial adenyl nucleotide antiporter SLC25A23 OS=Homo sapiens OX=9606 GN=SLC25A23 PE=1 SV=2
Q5XHA0	Mitochondrial adenyl nucleotide antiporter SLC25A24 OS=Xenopus tropicalis OX=8364 GN=slc25a24 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003641 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00036 all species →	EF-hand_1	EF hand	Domain	Interproscan
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR002167 all species →	Family	Solute carrier family 25 member 16-like	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24089 all species →	SOLUTE CARRIER FAMILY 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005347 all species →	Molecular Function	ATP transmembrane transporter activity	Interproscan
GO:0015866 all species →	Biological Process	ADP transport	Interproscan
GO:0015867 all species →	Biological Process	ATP transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14684	SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019737-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

48.7Max TPM

13.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.74	24.17
polyp at pH7 6	18	18	13.89	21.90
coral polyp · control treatment	16	16	17.92	48.68
coral polyp · oil and dispersant treatment	16	16	11.80	29.00
coral polyp · oil treatment	16	16	15.81	23.73
coral polyp · dispersant treatment	16	16	11.58	20.97
Polyp	10	9	7.89	17.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.